PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

110042

Common Name

SELMODRAFT_110042

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 155aa MW: 17107.2 Da PI: 10.445

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
110042	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	3e-16	1	40	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +eE+e+l+ a++ +G++ W+tIar ++ gRt++ +k++w+ + 110042 1 EEEEERLLGAHRFHGNK-WATIARLFP-GRTDNAVKNHWHVV 40 7**************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-15	1	39	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.914	1	45	IPR017930	Myb domain
SMART	SM00717	6.1E-7	1	43	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.19E-12	1	48	IPR009057	Homeodomain-like
Pfam	PF00249	9.6E-13	1	39	IPR001005	SANT/Myb domain
CDD	cd00167	3.63E-10	1	41	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
EEEEERLLGA HRFHGNKWAT IARLFPGRTD NAVKNHWHVV MARKYRERTR TYGRSPNAAS 60 TGKNTVTTAV KSDHPAPPSQ QLDHHNLLLN RGSTPVLLPS KRSLVDAEDR PTSSSATAAA 120 AAAAWMDSFH HRASNLMGFN PGRVECHHGL IYIV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002979033.2	5e-79	transcription factor MYB101
TrEMBL	D8S6T0	1e-110	D8S6T0_SELML; Uncharacterized protein (Fragment)
STRING	EFJ19989	1e-111	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	7e-26	myb domain protein 105

Link Out ? help Back to Top
Phytozome	110042
Entrez Gene	9659300

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]