PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

110103

Common Name

SELMODRAFT_450832, ZFP1d-1

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 56aa MW: 6056.81 Da PI: 10.2525

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
110103	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.5	1.3e-06	26	48	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C + F+++ L H++ H 110103 26 FPCPYCQRKFTSSQALGGHQNAH 48 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.99E-7	23	53	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.3E-5	24	52	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	3.9E-7	25	50	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.572	26	53	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	28	48	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 56 aa Download sequence Send to blast
MISVPPPSLD SSPTAFGGQA SEPRVFPCPY CQRKFTSSQA LGGHQNAHKR ERTAAR

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002979080.2	3e-32	uncharacterized protein LOC9659581
Refseq	XP_002986554.2	2e-32	uncharacterized protein LOC9658724
Swissprot	Q42485	6e-16	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	D8S6B6	2e-32	D8S6B6_SELML; EPF-type Cis2-His2 zinc finger transcription factor
STRING	EFJ20037	4e-33	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	3e-18	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	110103
Entrez Gene	9659581

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098]