PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 110104
Common NameSELMODRAFT_110104
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family RAV
Protein Properties Length: 261aa    MW: 29364.2 Da    PI: 10.2729
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
110104genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.5e-142977155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa+a+++a+ k++g
  110104 29 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNKEEEAARAYDRAAIKFRG 77
            78****9888.8*********3.....5************************998 PP
2B3103.89.2e-33158258199
             EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             f+k+ tpsdv+k++rlv+pk++ae++     +  +e++  l++ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+  +  ++el+++++r
  110104 158 FDKAVTPSDVGKLNRLVIPKQHAERCfpldlSA-NEKGLLLSFEDITGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDIVTFE--RGPGQELYISWRR 257
             89***************************9643.457789************************************************..449999******9 PP

             S CS
      B3  99 k 99 
             +
  110104 258 R 258
             8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-182985IPR016177DNA-binding domain
CDDcd000189.67E-272987No hitNo description
Gene3DG3DSA:3.30.730.103.7E-223085IPR001471AP2/ERF domain
PfamPF008471.8E-93077IPR001471AP2/ERF domain
SMARTSM003807.4E-303091IPR001471AP2/ERF domain
PROSITE profilePS5103220.4153085IPR001471AP2/ERF domain
PRINTSPR003672.7E-53142IPR001471AP2/ERF domain
PRINTSPR003672.7E-55167IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.4E-41148257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-30155258IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-27156245No hitNo description
PROSITE profilePS5086314.917158259IPR003340B3 DNA binding domain
SMARTSM010192.9E-26158259IPR003340B3 DNA binding domain
PfamPF023624.7E-29158258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNSTTKSGGG GGGGGAMVLS SESGKLPSSQ YKGVVPQPNG RWGAQIYEKH QRVWLGTFNK  60
EEEAARAYDR AAIKFRGRDA MTNFRPVHDS DPEASFLRLH SKEQVVDMLR RHTYDEELDQ  120
SRKITHARAM MIHHPASAAP PAKPSATAAS AVHREHLFDK AVTPSDVGKL NRLVIPKQHA  180
ERCFPLDLSA NEKGLLLSFE DITGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKKLDAGDI  240
VTFERGPGQE LYISWRRRPV P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-591542594114B3 domain-containing transcription factor NGA1
5os9_B3e-591542594114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383909.11e-119uncharacterized protein LOC112286345
RefseqXP_024383918.11e-119uncharacterized protein LOC112286345
SwissprotQ9ZWM91e-107RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLD8S6Z70.0D8S6Z7_SELML; Uncharacterized protein (Fragment)
STRINGEFJ200210.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.16e-97related to ABI3/VP1 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  3. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  4. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  5. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]