PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

111756

Common Name

SELMODRAFT_111756, SELMODRAFT_126160

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ZF-HD

Protein Properties

Length: 51aa MW: 5695.43 Da PI: 7.8732

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
111756	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	49	1.5e-15	5	51	4	55
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55 v Y C++N+ + + ++DGC Ef +s + kC ACgCHR+FH r 111756 5 VAYGACKRNQNHTSATPVLDGCMEFSSSFK-----GERKCEACGCHRSFHER 51 78**********************9944.....4589*********76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.6E-12	5	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-4	5	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	15.029	7	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 51 aa Download sequence Send to blast
MDVLVAYGAC KRNQNHTSAT PVLDGCMEFS SSFKGERKCE ACGCHRSFHE R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024517117.1	1e-30	uncharacterized protein LOC112341377
TrEMBL	D8S9A7	2e-30	D8S9A7_SELML; Uncharacterized protein (Fragment)
STRING	EFJ11479	3e-31	(Selaginella moellendorffii)
STRING	EFJ18781	3e-31	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	1e-08	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	111756
Entrez Gene	9628839 \| 9649600

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]