PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 112852
Common NameSELMODRAFT_112852
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 120aa    MW: 13440.6 Da    PI: 9.3672
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
112852genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.47.2e-161137127
             --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
             yktelCr + +tG C+yG++C+FaHg+
   112852 11 YKTELCRSWEETGSCRYGNKCQFAHGK 37
             9************************96 PP
2zf-CCCH44.91.9e-144973125
             --S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
             ykte Cr+f++ GtC+yG rC+F+H
   112852 49 YKTEVCRTFSAAGTCPYGKRCRFIH 73
             9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-19943IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-91037IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-111042IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.8021038IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-131137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-104578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-144574IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.1174876IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-94875IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-114973IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAEESDASKL YKTELCRSWE ETGSCRYGNK CQFAHGKEDL RPVNRHPKYK TEVCRTFSAA  60
GTCPYGKRCR FIHATPKLSD VKLPPLVAPA MNLTKLLLHD NAAAMAPRSR LPVFREICL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-28873166Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002980683.14e-85mRNA decay activator protein ZFP36L1
SwissprotP174318e-28TISB_RAT; mRNA decay activator protein ZFP36L1
SwissprotP239508e-28TISB_MOUSE; mRNA decay activator protein ZFP36L1
SwissprotP479802e-27TIS11_DROME; Protein TIS11
SwissprotQ073528e-28TISB_HUMAN; mRNA decay activator protein ZFP36L1
SwissprotQ7ZXW91e-27TISDA_XENLA; mRNA decay activator protein ZFP36L2-A
TrEMBLD8SB579e-84D8SB57_SELML; Uncharacterized protein
STRINGEFJ183341e-84(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-27C3H family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]