PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 113932
Common NameBDP1, MICPUN_113932
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 389aa    MW: 43440.4 Da    PI: 10.5717
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
113932genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-09299339345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WT e+ + +++a +q+G++ +++  r ++ gR++ q+k +++
           113932 299 KWTREDTDFFYEALRQFGTD-FSLLQRLFP-GRSRRQLKKKYL 339
                      8*******************.*********.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.7E-23290358No hitNo description
SMARTSM007173.6E-7296344IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-4298338IPR009057Homeodomain-like
SuperFamilySSF466891.42E-9298343IPR009057Homeodomain-like
CDDcd001678.33E-7299338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006413Biological Processtranslational initiation
GO:0003677Molecular FunctionDNA binding
GO:0003743Molecular Functiontranslation initiation factor activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MHVNKNRARE TRRQDAADHS KRHAQGDAAC PGSLSNQVSV GTTREQNNLR QAYSRLHDGK  60
RQKEGVQNDE STLLLLGSVQ SVKHNDLNLR ERNRPASKSG DSGNRGPTST HNPLFGKGTP  120
AHRWVRTAST VRGNRLNATS RKNGAAPFSS KADYDVSRSI RDIIRQRSRE ERVAESKNRA  180
VTRSTDTQPS PEKRQATVAP SQVVDGIGKN AKYSQKLLRD ESNVCNMGVE SNVAGLSDGT  240
FPGAPQVRVV DGRIVVNEKS LIVSAMDERA SILRDFIRVE ESGNKLNSAT YANYTKAEKW  300
TREDTDFFYE ALRQFGTDFS LLQRLFPGRS RRQLKKKYLV EDKVNPSRIE AAINDLKPRQ  360
QLYRSLIDLL TVPEQNASVE DARELLSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C4e-1324235819140Transcription factor TFIIIB component B'' homolog
5n9g_H4e-1324235819140Transcription factor TFIIIB component B'' homolog
6cnb_S7e-12251353369473Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S7e-12251353369473Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S7e-12251353369473Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S7e-12251353369473Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6eu0_V7e-12251353369473Transcription factor TFIIIB component B''
6f40_W7e-12251353369473Transcription factor TFIIIB component B''
6f41_W7e-12251353369473Transcription factor TFIIIB component B''
6f42_W7e-12251353369473Transcription factor TFIIIB component B''
6f44_W7e-12251353369473Transcription factor TFIIIB component B''
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015740.0CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002507097.10.0transcription initiation factor TFIIIB, Bdp1 subunit
TrEMBLC1FDA10.0C1FDA1_MICCC; Transcription initiation factor TFIIIB, Bdp1 subunit
STRINGXP_002507097.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP377099
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.21e-15MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]