PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

113962

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

M-type_MADS

Protein Properties

Length: 71aa MW: 8076.59 Da PI: 10.0778

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
113962	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.1	1.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRr+g+ KKA+ELS+LCd+++a+i+fs++gkl y++ 113962 9 KKIENATNRQVTYSKRRTGLVKKAYELSTLCDIDIALIMFSPSGKLTQYAT 59 78***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.777	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.7E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-27	2	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.43E-32	2	65	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MGRVKLEIKK IENATNRQVT YSKRRTGLVK KAYELSTLCD IDIALIMFSP SGKLTQYATD 60 MRYLICLFIN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	9e-20	1	61	1	62	MEF2 CHIMERA
6byy_B	9e-20	1	61	1	62	MEF2 CHIMERA
6byy_C	9e-20	1	61	1	62	MEF2 CHIMERA
6byy_D	9e-20	1	61	1	62	MEF2 CHIMERA
6bz1_A	8e-20	1	61	1	62	MEF2 CHIMERA
6bz1_B	8e-20	1	61	1	62	MEF2 CHIMERA
6bz1_C	8e-20	1	61	1	62	MEF2 CHIMERA
6bz1_D	8e-20	1	61	1	62	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FM999805	1e-102	Selaginella moellendorffii mRNA for MADS1 protein, allele 2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002981044.1	2e-36	agamous-like MADS-box protein AGL3
Swissprot	Q9LM46	4e-27	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	D8SCP2	5e-35	D8SCP2_SELML; MADS-domain transcription factor
TrEMBL	H1ZSL5	1e-36	H1ZSL5_9TRAC; MADS1 protein (Fragment)
STRING	EFJ17745	9e-36	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	2e-29	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	113962

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]