PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 117217
Common NameNPH4A-1, SELMODRAFT_179736
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ARF
Protein Properties Length: 402aa    MW: 45087.9 Da    PI: 8.8845
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
117217genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.86.5e-26130231199
             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             f+k+lt sd++++g +++p++ ae+        +++++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+a++L++gD v+F   ++++++l++++
  117217 130 FCKTLTASDTSTHGGFSIPRRAAEKVfppldfsQQPPA--QEIVARDLHDTEWRFRHIYRGQPRRHLLTTGWSVFVSAKRLQTGDAVLFI--RDEKGQLLLGI 228
             99*****************************8544444..49************************************************..5689999**** PP

             E-S CS
      B3  97 frk 99 
             +r+
  117217 229 RRA 231
             997 PP
2Auxin_resp111.67.7e-37256340183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk..vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha st+s F+++YnPras+seFv++++k+ +a++  ++vs+GmRf+m+fete+s  rr +Gt+vg  dldpvrWpnS+WrsLk
      117217 256 AAHANSTSSRFTIFYNPRASPSEFVIPLSKYYNAVYnnMQVSPGMRFRMQFETEESGIRRHTGTIVGSGDLDPVRWPNSHWRSLK 340
                 799*******************************9866799******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-48114259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-43121243IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-24129230No hitNo description
SMARTSM010196.2E-26130232IPR003340B3 DNA binding domain
PROSITE profilePS5086313.352130232IPR003340B3 DNA binding domain
PfamPF023624.3E-24130231IPR003340B3 DNA binding domain
PfamPF065075.4E-33256340IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MLAELGVYQS SKPQCFTPGV KRGPNPELWH ACAGPLVSLP SVGTRVVYFP QGHSEQVAAS  60
TQKEADADIP SYPNLPPHLV CQLHNITLHA DTETDEVYAQ MTLQPMNAQE KDSFMVSDLG  120
RQNRQPSEYF CKTLTASDTS THGGFSIPRR AAEKVFPPLD FSQQPPAQEI VARDLHDTEW  180
RFRHIYRGQP RRHLLTTGWS VFVSAKRLQT GDAVLFIRDE KGQLLLGIRR ANRQQASMPL  240
SLLSTDSMYI GILAAAAHAN STSSRFTIFY NPRASPSEFV IPLSKYYNAV YNNMQVSPGM  300
RFRMQFETEE SGIRRHTGTI VGSGDLDPVR WPNSHWRSLK VEWDEPAAGE KQQRISLWEI  360
EPASTPYLVC SPSFTFRSKR PWSQALGPNP IASKPRDTRG F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1672536152388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024520458.10.0auxin response factor 16
RefseqXP_024543596.10.0auxin response factor 16
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLD8SHF10.0D8SHF1_SELML; Auxin response factor
STRINGEFJ160990.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  3. Oh E, et al.
    Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
    Elife, 2015.
    [PMID:24867218]
  4. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  5. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  6. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  7. Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
    Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
    Genet. Mol. Res., 2015. 14(3): p. 7386-94
    [PMID:26214417]
  8. Li P, et al.
    Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
    Plant Cell Environ., 2016. 39(2): p. 377-92
    [PMID:26296956]
  9. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  10. Luo S, et al.
    Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1156
    [PMID:26734051]
  11. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  12. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  13. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]