PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

117274

Common Name

SELMODRAFT_117274, SELMODRAFT_132659

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 109aa MW: 12021.8 Da PI: 8.2202

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
117274	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.1e-05	7	46	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++++ L++l+ + +K + a++L +A+ YIk L 117274 7 QVRKEKLGERISALQQLVSPF-----GKTDTASVLLEAIGYIKFL 46 567788999*******998.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.899	1	46	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-12	7	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-9	7	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-6	9	51	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
EMEMQMQVRK EKLGERISAL QQLVSPFGKT DTASVLLEAI GYIKFLHEQV QVLSSPYMKP 60 AGVSTTTRQT DRQDLRSRGL CLVPVSCTLQ VANDNGADYW APTLHGLK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024543734.1	2e-65	uncharacterized protein LOC9661941 isoform X2
Swissprot	Q7XJU1	5e-38	BH154_ARATH; Transcription factor bHLH154
Swissprot	Q9LT67	2e-37	BH113_ARATH; Transcription factor bHLH113
TrEMBL	D8SHL1	4e-75	D8SHL1_SELML; Uncharacterized protein (Fragment)
STRING	EFJ08037	7e-76	(Selaginella moellendorffii)
STRING	EFJ16130	7e-76	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1342	13	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	117274
Entrez Gene	9660002 \| 9661941

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]