PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

118783

Common Name

SELMODRAFT_118783, SELMODRAFT_129268

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Nin-like

Protein Properties

Length: 66aa MW: 7722.07 Da PI: 11.8576

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
118783	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.9	1.8e-27	5	54	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + +++++dl+++F+lpi++AAkeLg+c+TvLK+iCR++G++RWPhRk++ 118783 5 TGKLKMSDLAQHFHLPINAAAKELGICPTVLKKICRRNGMRRWPHRKVSD 54 5689*******************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.142	1	65	IPR003035	RWP-RK domain
Pfam	PF02042	9.9E-26	8	54	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
QRERTGKLKM SDLAQHFHLP INAAAKELGI CPTVLKKICR RNGMRRWPHR KVSDVITSSR 60 WQHWF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002983687.2	5e-33	protein NLP1
TrEMBL	D8SK84	2e-41	D8SK84_SELML; Uncharacterized protein (Fragment)
STRING	EFJ09812	3e-42	(Selaginella moellendorffii)
STRING	EFJ15183	3e-42	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-13	Nin-like family protein

Link Out ? help Back to Top
Phytozome	118783
Entrez Gene	9628906 \| 9643852

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]