PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 119524
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Nin-like
Protein Properties Length: 122aa    MW: 14052.3 Da    PI: 10.0893
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
119524genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK76.14.1e-24650852
  RWP-RK  8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
            + +s+y  l+i+dAAkeLg+++T+LK++CRqyGI+RWPhR++ksl
  119524  6 QLISMYAVLKIEDAAKELGMGTTALKKRCRQYGIHRWPHRQLKSL 50
            6799***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.392170IPR003035RWP-RK domain
PfamPF020421.0E-18850IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MTSKQQLISM YAVLKIEDAA KELGMGTTAL KKRCRQYGIH RWPHRQLKSL DNLIDALEKL  60
TDDSTGDSTD ASCIETAIMQ LKYHRQRIAK DPCYKIPQSV FRLRQAQFKD KHRRTKEVNC  120
V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005828e-63CP000582.1 Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416406.11e-86RWP-RK domain-containing protein
TrEMBLA4RSZ72e-85A4RSZ7_OSTLU; RWP-RK domain-containing protein
STRINGABO946994e-86(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP841650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.17e-20RWP-RK domain-containing protein