PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 119601
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family E2F/DP
Protein Properties Length: 250aa    MW: 27860.7 Da    PI: 5.3758
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
119601genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.83.3e-22970167
  E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkeknei 67
             r ++sL+llt++f++ll++s++g+++lne+a +L    v  ++RRiYDi+NVLe+++l++k +kn++
   119601  9 RFDSSLGLLTTRFMTLLRESPKGTLDLNEAAVAL---LV--QKRRIYDITNVLEGIGLVTKVSKNKV 70
             6789******************************...89..***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-22770IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-30974IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.48E-16970IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.0E-211170IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440743.4E-697168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLPKPGASRF DSSLGLLTTR FMTLLRESPK GTLDLNEAAV ALLVQKRRIY DITNVLEGIG  60
LVTKVSKNKV VLRHVHSQPS LAEYEHQANV ASNTVVDDKL DQMKEIIRSI FADTQHEAGI  120
FIPESEMLEC AALSRAMLIA TSAPTGTTLQ VPSPFGSENL IPHYRLLLAT DDEYSDGMQV  180
FVLSSETNKS SSSERVRCGE YENPPIPEML GNRAMHEPHP EKKCHDDSYW FVEKETKLEV  240
NVNELYKTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-18370169PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005820.0CP000582.1 Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416444.10.0transcription factor E2F
TrEMBLA4RSR60.0A4RSR6_OSTLU; Transcription factor E2F
STRINGABO947370.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP32581314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.35e-33E2F transcription factor 1