PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1200010147
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family G2-like
Protein Properties Length: 206aa    MW: 22761.8 Da    PI: 10.6857
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1200010147genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.9e-2776128255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +rl+Wtp LH++Fv  ve+L G + A+Pk+i+++m+v+gLt+e+v+SHLQkYR+
  1200010147  76 ARLVWTPALHAQFVAPVEKL-GVDAAVPKSIMKIMNVEGLTRENVASHLQKYRI 128
                 79******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.60972131IPR017930Myb domain
SuperFamilySSF466897.35E-1874132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2774132IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-2276128IPR006447Myb domain, plants
PfamPF002494.5E-678127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGQINRRARR SQPLSSGVTH CRVVSIVVSW SHPLSSGFDR RLVVSLKPGF DYFRVVSPIV  60
GLTGGCVATA ELRKRARLVW TPALHAQFVA PVEKLGVDAA VPKSIMKIMN VEGLTRENVA  120
SHLQKYRINL KRKKFSSEST EGLDDTDGDT RSMRKKNKAE AGDSDRGSGP TTNGSDDDVT  180
TRKLSSSCYG EETRHESKRR VREYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-2275131157Transcription factor LUX
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003082291.28e-99Myb domain, plants
TrEMBLA0A090MAV92e-97A0A090MAV9_OSTTA; Myb domain, plants
STRINGA0A090MAV93e-98(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.13e-25G2-like family protein