PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1200010223
Common NameOt12g02230, OT_ostta12g02210
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 328aa    MW: 36297.9 Da    PI: 8.1555
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1200010223genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-07628427
                ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                ++Cr+f r G+C+ Gd C+F H+p
  1200010223  6 PPCRHFTR-GHCRLGDACRFTHDP 28
                89******.***********9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.079229IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4228IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-5628IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5727IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5728IPR000571Zinc finger, CCCH-type
PfamPF136793.4E-653262IPR025714Methyltransferase domain
SuperFamilySSF533352.91E-754165IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1507.0E-657130IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016874Molecular Functionligase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MADPPPPCRH FTRGHCRLGD ACRFTHDPSV GVRARSTTKS GRSGRGGVDP RKKVQLFTDF  60
LRETFDDLRD ARVLDVAGGK GALAFDVCNR TSATGVTVID PRPMKRDALR ARWTRWLASR  120
TEVEKRDGAA VTVREPEHLR VYWTREVWEG RERAVRASWE LARSSRWCVS GLVADSGDGK  180
YEDGAKSARV RVSEAGIEAP MDALDANEDA ESDATFEETF EALDEAIKKC THVVAMHPDQ  240
ATDAAVDFAL ERGLPFAVVP CCVYSKEFST RRLRSGERVS THDQLVTYLA EKAGIADVRV  300
AELPFRGKNR VVYSLGRVRS SCAPIEN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003082369.10.0Putative E3 ubiquitin-protein ligase,makorin-related
TrEMBLQ00XT60.0Q00XT6_OSTTA; Putative E3 ubiquitin-protein ligase,makorin-related
STRINGQ00XT60.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP348811
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]