PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 121021
Common NameSELMODRAFT_121021, SELMODRAFT_123062
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 110aa    MW: 12682.4 Da    PI: 10.4625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
121021genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.7e-081665147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                     r +++  E e lv+av+qlG+g+W+ +        k+Rt  ++k++w ++
           121021 16 RRPFSVGEVESLVQAVEQLGTGRWRDVKLQAFenaKHRTYVDLKDKWKTL 65
                     568888999*****************8777778**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2211170IPR017930Myb domain
SMARTSM007175.0E-51568IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-101666IPR009057Homeodomain-like
SuperFamilySSF466895.46E-161797IPR009057Homeodomain-like
CDDcd116607.99E-151767No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MRPKSHSLEI HKRRIRRPFS VGEVESLVQA VEQLGTGRWR DVKLQAFENA KHRTYVDLKD  60
KWKTLVHTAQ IAPHQRRGDP VPQELLDRVI AANNYWAAHQ AKEQAELEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-5141065107Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002984862.27e-73telomere repeat-binding protein 5 isoform X2
RefseqXP_002985917.28e-73telomere repeat-binding protein 5 isoform X2
RefseqXP_024515463.12e-73telomere repeat-binding protein 5 isoform X3
RefseqXP_024545764.12e-73telomere repeat-binding protein 5 isoform X3
SwissprotQ6R0E33e-48TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLD8SN442e-74D8SN44_SELML; Uncharacterized protein
STRINGEFJ130943e-75(Selaginella moellendorffii)
STRINGEFJ141123e-75(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-50TRF-like 2
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]