PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 123130
Common NameMICPUCDRAFT_47031
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 200aa    MW: 22158.6 Da    PI: 9.5875
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
123130genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.8e-062242525
             --SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
             +Cr  + + +C++G++C+++H
   123130 22 PCRAVMNGQQCRRGAKCTYSH 42
             699999999************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.7981745IPR000571Zinc finger, CCCH-type
SMARTSM003560.00481844IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-42242IPR000571Zinc finger, CCCH-type
CDDcd091718.09E-7638174No hitNo description
SuperFamilySSF560241.1E-2840182No hitNo description
Gene3DG3DSA:3.30.870.103.6E-3143178No hitNo description
PfamPF130912.4E-2852174IPR025202Phospholipase D-like domain
PROSITE profilePS500358.846123146IPR001736Phospholipase D/Transphosphatidylase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGCGGSKPVA PPVLFFPDPG MPCRAVMNGQ QCRRGAKCTY SHQKTSLVKF LDELYAARKT  60
LDVCVFTITC NEIAEAIIAA KKRGVKVRVI TDDEQAKCTG SDVYQIASEG IETRTDSDPI  120
THMHHKFAII DKKTLLNGSF NWTRQAVLGN RENVIIMRNP ALCDVFTKEF NAQWKLFEKN  180
KVPKNMHQGG GGGQQRNRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ggj_A2e-301318111181Mitochondrial cardiolipin hydrolase
4ggk_A2e-301318111181Mitochondrial cardiolipin hydrolase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003057731.11e-150predicted protein
TrEMBLC1MQC21e-148C1MQC2_MICPC; Predicted protein
STRINGXP_003057731.11e-149(Micromonas pusilla)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]