PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 129362
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family GATA
Protein Properties Length: 70aa    MW: 7157.23 Da    PI: 7.9518
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
129362genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-174270129
    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGly 29
            C++C+t +TplWR+gpdg+ktLCnaCG++
  129362 42 CAHCNTQTTPLWRNGPDGPKTLCNACGVR 70
            ***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.2E-53670IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-133670No hitNo description
PROSITE profilePS5011413.6793670IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-144070IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.42E-124170No hitNo description
PfamPF003202.8E-154270IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
PASAEPPAVV LPQAAIPPPT TDVPTHAPSG ELLLPGIPGK RCAHCNTQTT PLWRNGPDGP  60
KTLCNACGVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840799.19e-20Zinc finger, GATA-type
TrEMBLA0A090M7V52e-18A0A090M7V5_OSTTA; Zinc finger, GATA-type
TrEMBLA0A1Y5I4U52e-18A0A1Y5I4U5_OSTTA; Uncharacterized protein
STRINGA0A090M7V53e-19(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP43691012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-14GATA transcription factor 9