PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

133546

Common Name

SELMODRAFT_133546, SELMODRAFT_137652

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 176aa MW: 19287.8 Da PI: 11.5616

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
133546	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.7	4.8e-12	99	143	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W +eE+ l++ + + lG+g+W+ I+r + Rt+ q+ s+ qky 133546 99 PWREEEHRLFLVGLHALGKGDWRGISRNYVTSRTPTQVASHAQKY 143 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	9.125	3	20	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	9.2E-5	3	21	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	16.669	92	148	IPR017930	Myb domain
SuperFamily	SSF46689	7.41E-16	93	149	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-16	95	147	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.8E-9	96	142	IPR009057	Homeodomain-like
SMART	SM00717	8.4E-9	96	146	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-9	99	143	IPR001005	SANT/Myb domain
CDD	cd00167	3.49E-8	99	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MARRCSHCGH NGHNSRTCPD RGIRLFGVRL TMKATDGASG VAMRRSASAG NLVTMQAIAT 60 PTSSSAVASE QSESGGDGYA SDGLVQASSY ARARKKGVPW REEEHRLFLV GLHALGKGDW 120 RGISRNYVTS RTPTQVASHA QKYFIRQSNL TKRKRRSSLF DISPEVRRSI HLFFH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024523230.1	1e-120	transcription factor MYBS3 isoform X2
Swissprot	Q7XC57	1e-71	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	D8T774	1e-126	D8T774_SELML; Uncharacterized protein
STRING	EFJ05081	1e-127	(Selaginella moellendorffii)
STRING	EFJ07570	1e-127	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP394	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-67	MYB_related family protein

Link Out ? help Back to Top
Phytozome	133546
Entrez Gene	9639118 \| 9639572

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]