PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 133654
Common NameMICPUCDRAFT_8525
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB
Protein Properties Length: 98aa    MW: 11653.5 Da    PI: 11.3309
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
133654genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16144448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     WT +Ed  l ++v ++G + W+ Ia++m+ gR +kqc++rw+++l
           133654  1 WTLQEDNVLRKLVGEHGHRKWSFIASKMN-GRRGKQCRDRWLNHL 44
                     *****************************.*************97 PP
2Myb_DNA-binding537.7e-175092145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg WT+eE+ +lv+++++lG++ W++ a+ ++ gR ++ +k++w+
           133654 50 RGEWTAEEERILVEGHRMLGTR-WAALAKLLP-GRPENAIKNHWH 92
                     89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-26151IPR009057Homeodomain-like
SuperFamilySSF466891.83E-28191IPR009057Homeodomain-like
CDDcd001671.35E-11144No hitNo description
SMARTSM007175.6E-11146IPR001005SANT/Myb domain
PROSITE profilePS5129425.592148IPR017930Myb domain
PfamPF139211.6E-18158No hitNo description
PROSITE profilePS5129419.2054998IPR017930Myb domain
SMARTSM007173.5E-144997IPR001005SANT/Myb domain
CDDcd001675.56E-95295No hitNo description
Gene3DG3DSA:1.10.10.609.4E-215297IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
WTLQEDNVLR KLVGEHGHRK WSFIASKMNG RRGKQCRDRW LNHLKPDIRR GEWTAEEERI  60
LVEGHRMLGT RWAALAKLLP GRPENAIKNH WHATLRCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-361987104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003063222.13e-66predicted protein, partial
SwissprotQ9FIM45e-36MY119_ARATH; Transcription factor MYB119
TrEMBLC1N5V56e-65C1N5V5_MICPC; Predicted protein (Fragment)
STRINGXP_003063222.11e-65(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-38myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]