PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 133691
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family NF-YC
Protein Properties Length: 91aa    MW: 9869.57 Da    PI: 7.5233
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
133691genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.61.5e-149832397
   NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
             arik++++adedv +i+  +Pvl+ +a +lf+ el   +   a   + +t     + aa+   ++fdfl div 
  133691  9 CARIKRLMQADEDVGKIAQATPVLMVRALDLFVEELMNATTSIATAHSAKTASAGHLRAAIMGNEKFDFLKDIVE 83
            38**********************************99988899999999**********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.3E-131069IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471136.2E-181087IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.2E-211083IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MPPKKNPLCA RIKRLMQADE DVGKIAQATP VLMVRALDLF VEELMNATTS IATAHSAKTA  60
SAGHLRAAIM GNEKFDFLKD IVEAVPDLPQ P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003056791.16e-50predicted protein, partial
SwissprotQ103154e-24BUR6_SCHPO; Transcription regulator complex subunit bur6
TrEMBLC1MPB41e-48C1MPB4_MICPC; Predicted protein (Fragment)
STRINGXP_003056791.12e-49(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP33431313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.14e-22NF-YC family protein