PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 135978
Common NameGBF_1, SELMODRAFT_135978
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bZIP
Protein Properties Length: 79aa    MW: 9282.47 Da    PI: 8.5098
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
135978genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.23.1e-22264163
            XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
            e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL+++v++L+ eN++L++ele+  +e  kl +e+
  135978  2 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRVESLTMENMSLRQELEQAMEERNKLAAEN 64
            89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-16161No hitNo description
SMARTSM003381.4E-19266IPR004827Basic-leucine zipper domain
PfamPF001701.2E-20264IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.852467IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.0E-11658No hitNo description
CDDcd147027.72E-11756No hitNo description
PROSITE patternPS000360924IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
DERELKRQRR KQSNRESARR SRLRKQAECE ELAQRVESLT MENMSLRQEL EQAMEERNKL  60
AAENAALLVS SLTLFYLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824RRSRLRK
21825RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
UniProtTrans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024517156.13e-36bZIP transcription factor 16-like isoform X1
RefseqXP_024517157.13e-36bZIP transcription factor 16-like isoform X2
SwissprotP427765e-23GBF3_ARATH; G-box-binding factor 3
SwissprotQ991425e-23TAF1_TOBAC; Transcriptional activator TAF-1 (Fragment)
TrEMBLD8TB332e-44D8TB33_SELML; Uncharacterized protein GBF_1 (Fragment)
STRINGEFJ061103e-45(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-25G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Oeda K,Salinas J,Chua NH
    A tobacco bZip transcription activator (TAF-1) binds to a G-box-like motif conserved in plant genes.
    EMBO J., 1991. 10(7): p. 1793-802
    [PMID:2050116]
  3. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]