PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 13931
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 234aa    MW: 25528.8 Da    PI: 9.8413
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
13931genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.9e-1288127344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +W++++ el+++a +q+G++ +++Iar ++ gRt+ q+k ++
            13931  88 KWSKDDTELFYRAMTQFGTD-FSLIARLFP-GRTRRQVKRKY 127
                      8*******************.*********.*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159637.9E-2879163No hitNo description
Gene3DG3DSA:1.10.10.609.0E-882127IPR009057Homeodomain-like
PROSITE profilePS5129310.18784135IPR017884SANT domain
SMARTSM007177.8E-985133IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-1187130IPR009057Homeodomain-like
CDDcd001674.57E-988127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MPDFGKKKTA SEPVGPLELP GRASMAPKLA VMAPQVQVID GNIVINPQSL TVNAAAEKDV  60
GMSDFKRVEE SGTRLNSATY SNRAKAEKWS KDDTELFYRA MTQFGTDFSL IARLFPGRTR  120
RQVKRKYLIE DRADPRRVEA AIKHRDQDPA MYKRLIEVLQ AQAAEADLAR SSIDARVVLD  180
ADTAEEATPP AVEDAQATDE SSPKTGGQRG ATKEAAALSA EQPTATRARR SRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C4e-143116722158Transcription factor TFIIIB component B'' homolog
5n9g_H4e-143116722158Transcription factor TFIIIB component B'' homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125RRQVKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005810.0CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415952.11e-168predicted protein
TrEMBLA4RRS71e-167A4RRS7_OSTLU; Uncharacterized protein
STRINGABO942441e-168(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP377099
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.17e-20MYB_related family protein