PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 139631
Common NameSELMODRAFT_139631, SELMODRAFT_87254
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HD-ZIP
Protein Properties Length: 186aa    MW: 20897.8 Da    PI: 10.0607
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
139631genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181670256
              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              rk+ +++keq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
    139631 16 RKKLRLSKEQSALLEDSFREHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTK 70
              778899***********************************************98 PP
2HD-ZIP_I/II123.78.7e-4016104190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rlskeq++lLE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+ ++ l+een+rL+ke +eLr +
       139631  16 RKKLRLSKEQSALLEDSFREHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKYCEGLSEENRRLQKELQELR-A 104
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.1511272IPR001356Homeobox domain
SMARTSM003898.5E-161476IPR001356Homeobox domain
SuperFamilySSF466891.75E-181480IPR009057Homeodomain-like
CDDcd000861.86E-141673No hitNo description
Gene3DG3DSA:1.10.10.601.1E-171670IPR009057Homeodomain-like
PfamPF000461.1E-151670IPR001356Homeobox domain
PROSITE patternPS0002704770IPR017970Homeobox, conserved site
PfamPF021834.3E-972106IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.4E-2272115IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTSSRAASDE EEGGTRKKLR LSKEQSALLE DSFREHSTLN PKQKNALAKQ LNLRPRQVEV  60
WFQNRRARTK LKQTEVDCEL LKKYCEGLSE ENRRLQKELQ ELRALKISPP CVITHDFYMP  120
LPATTLTMCP SCERLASSMD NGNNTGNTTT KVPSKPLSTN FQSTAATTMA RFAQSRPTPS  180
LLQPV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11420TRKKLRL
26472RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002967384.21e-133homeobox-leucine zipper protein HOX15
SwissprotP466652e-67HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLD8QQV41e-133D8QQV4_SELML; Uncharacterized protein
STRINGEFJ319831e-134(Selaginella moellendorffii)
STRINGEFJ378671e-134(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-69homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]