PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1400010209
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Nin-like
Protein Properties Length: 88aa    MW: 9683.17 Da    PI: 10.0261
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1400010209genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK39.21.3e-129451349
      RWP-RK 13 yFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49
                +  l+  dAA eLg ++T+ K++ Rq+G++RWP R+ 
  1400010209  9 HALLSADDAAIELGFGTTTFKKRLRQLGVRRWPGRQF 45
                5667889****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.684168IPR003035RWP-RK domain
PfamPF020422.4E-111045IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MGLDCVYAHA LLSADDAAIE LGFGTTTFKK RLRQLGVRRW PGRQFAGVLK CYEYIVTVLN  60
VRKATRGSCV FSKATTEPRS NDRLTDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022841348.16e-38RWP-RK domain
TrEMBLA0A1Y5ICM56e-58A0A1Y5ICM5_OSTTA; Uncharacterized protein
STRINGA0A096PBT92e-37(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1331433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.27e-08Nin-like family protein