PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 141010
Common NameSELMODRAFT_141010
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family CO-like
Protein Properties Length: 288aa    MW: 32364 Da    PI: 6.1256
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
141010genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box31.63.4e-10448341
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
               ++C+ +e ++++l+Ce ++ +lC++C  + H g       H++++
    141010  4 RPNCDVCEMQRASLYCEADEAYLCHECDASVH-GantlasrHKRIS 48
              689*****************************.5578888888765 PP
2CCT64.33.6e-22227270144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             Rea+++RY+eKr+tR F+KkirYe+RK +Ae+RpR+KGrFv+++
  141010 227 REARVNRYREKRRTRMFSKKIRYEVRKIYAENRPRLKGRFVRRT 270
             9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.765249IPR000315B-box-type zinc finger
SMARTSM003362.9E-11249IPR000315B-box-type zinc finger
PfamPF006432.8E-8448IPR000315B-box-type zinc finger
CDDcd000219.09E-10746No hitNo description
PROSITE profilePS511528.914209269IPR001289Nuclear transcription factor Y subunit A
PfamPF062033.0E-17227269IPR010402CCT domain
PROSITE profilePS5101716.182227269IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005622Cellular Componentintracellular
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAKRPNCDVC EMQRASLYCE ADEAYLCHEC DASVHGANTL ASRHKRISFK QEQEEEEEEE  60
NLEENDGVCP AHNFADSSFS LSRPSTVDYP LGGVRIGDVT YARVSSHTGS GGASLIAPRR  120
KEDEELHQVP RFVPVAQELP SLEPFRFHAL ASNGRASPVR STRFMSLLEG EATDADENHG  180
APDEDGAQEN QELGVVPDLV SPRTVEPAAA KPVAALPKGG PRLDKEREAR VNRYREKRRT  240
RMFSKKIRYE VRKIYAENRP RLKGRFVRRT NEIESLQCLW SEDQVRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002962768.10.0zinc finger protein CONSTANS
TrEMBLD8QU340.0D8QU34_SELML; Uncharacterized protein
STRINGEFJ362310.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP84523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.15e-21CONSTANS-like 3
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]