PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

142207

Common Name

SELMODRAFT_450232

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 430aa MW: 47503.4 Da PI: 6.7381

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
142207	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	246.4	1.1e-75	63	420	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105 + L+ cA+av++++ + l +++ ++ + +p+q++a ++ ALaarla+++++ y+a+++ +s++ +++ P++ ++ aN+ Il+a 142207 63 SSLMVCARAVAANNVAGFYDLARDIRDAVALQSTPLQKVARFLIDALAARLAGTGPQAYRAISAGISSRMLVAD---------ARLPLFAVAVNFANNVILRA 156 679******************************************************999888877433333.........467************* PP GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208 +g+++vHiiD+++ G QWp+L++a++ Rpegpp+l+iTg++ + e g+rLa fA++ gv++e+ + ++++e++++ +L +E l+Vn+ + 142207 157 CAGANKVHIIDYGVHCGRQWPSLIKAFSVRPEGPPQLKITGIDL---VTVPEAFVAGQRLAAFARSNGVQLEYCSIQSNSWESVQPVTL---ANELLVVNSNM 253 ****************************************...568888899****************999****99...89***** PP GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhe 310 +l+r+ de s++++r+ + + + +++Pkv+v++ ++a+ +s+ F +f e+l++++a +++l+a l+ +s +r +E++ ++r+i++vvac g e+ er 142207 254 SLKRMRDEWISVNNPRRLLFESIYKMRPKVFVMCVSNASFSSPFFIPKFDETLKHFTAKMECLDAWLGWDSiGDRDLIEKV-FQRAIMSVVACDGLEQLERPD 355 *******************************************************************9999999999.***************** PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++W +r ++aGF+p ++e++++ +k+ ++ ++ + +++++++lgWkd L +SaW+ 142207 356 KYRTWDSRAKRAGFQPFLIGEEVYERMKSQWGGYAcKKNFGCGKDENWMLLGWKDVILCGMSAWQ 420 *******************************9999***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.942	35	399	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-73	63	420	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MLLEDEGEGE ADSAQQQKPS FQGLFDELSA IVSPSESSDG STEGSDQSSG LEVNLGRTTD 60 IYSSLMVCAR AVAANNVAGF YDLARDIRDA VALQSTPLQK VARFLIDALA ARLAGTGPQA 120 YRAISAGISS RMLVADARLP LFAVAVNFAN NVILRACAGA NKVHIIDYGV HCGRQWPSLI 180 KAFSVRPEGP PQLKITGIDL VTVPEAFVAG QRLAAFARSN GVQLEYCSIQ SNSWESVQPV 240 TLANELLVVN SNMSLKRMRD EWISVNNPRR LLFESIYKMR PKVFVMCVSN ASFSSPFFIP 300 KFDETLKHFT AKMECLDAWL GWDSIGDRDL IEKVFQRAIM SVVACDGLEQ LERPDKYRTW 360 DSRAKRAGFQ PFLIGEEVYE RMKSQWGGYA CKKNFGCGKD ENWMLLGWKD VILCGMSAWQ 420 TKAQSLIKF*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MLLEDEGEGE ADSAQQQKPS FQGLFDELSA IVSPSESSDG STEGSDQSSG LEVNLGRTTD  60
IYSSLMVCAR AVAANNVAGF YDLARDIRDA VALQSTPLQK VARFLIDALA ARLAGTGPQA  120
YRAISAGISS RMLVADARLP LFAVAVNFAN NVILRACAGA NKVHIIDYGV HCGRQWPSLI  180
KAFSVRPEGP PQLKITGIDL VTVPEAFVAG QRLAAFARSN GVQLEYCSIQ SNSWESVQPV  240
TLANELLVVN SNMSLKRMRD EWISVNNPRR LLFESIYKMR PKVFVMCVSN ASFSSPFFIP  300
KFDETLKHFT AKMECLDAWL GWDSIGDRDL IEKVFQRAIM SVVACDGLEQ LERPDKYRTW  360
DSRAKRAGFQ PFLIGEEVYE RMKSQWGGYA CKKNFGCGKD ENWMLLGWKD VILCGMSAWQ  420
TKAQSLIKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-23	68	423	25	381	Protein SCARECROW
5b3h_D	2e-23	68	423	25	381	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002963995.1	0.0	scarecrow-like protein 14
TrEMBL	D8QYZ4	0.0	D8QYZ4_SELML; GRAS family protein
STRING	EFJ34328	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	3e-63	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	142207
Entrez Gene	9654375

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]