PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

147206

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 155aa MW: 17701.2 Da PI: 6.6816

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
147206	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.9	8e-55	16	119	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 ql++fw+ q ie+ +dfknh+lPlarikki+k+dedv+mis+eaPvl++kace+fileltlrsw+h+eenkrrtl+++diaaa+t+tdifdflvdivprd+ 147206 16 QLRTFWQGQmreIETGSDFKNHQLPLARIKKIMKSDEDVRMISSEAPVLFAKACEMFILELTLRSWIHSEENKRRTLQRNDIAAAITKTDIFDFLVDIVPRDD 118 89***997778999***********************************************************************************98 PP NF-YC 101 l 101 147206 119 F 119 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.1E-32	16	110	IPR009072	Histone-fold
Pfam	PF00808	3.8E-22	38	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.9E-38	39	116	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
AYQMQTHHVA QQHQLQLRTF WQGQMREIET GSDFKNHQLP LARIKKIMKS DEDVRMISSE 60 APVLFAKACE MFILELTLRS WIHSEENKRR TLQRNDIAAA ITKTDIFDFL VDIVPRDDFK 120 EEGMNVQRAQ GGAGVGEGGG GIASVPYNPG MYYMQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-55	23	116	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	94	RRTLQRN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003061605.1	3e-93	predicted protein, partial
Swissprot	Q8LCG7	1e-65	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	C1N0B5	7e-92	C1N0B5_MICPC; Predicted protein (Fragment)
STRING	XP_003061605.1	1e-92	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2195	16	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	5e-67	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	147206

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]