PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

14788

Common Name

MICPUCDRAFT_14788

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 193aa MW: 21684.5 Da PI: 11.1571

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
14788	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.3	2.6e-08	115	147	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp ++++e++A+ g+t +qV +WF N R + 14788 115 SPYPEERDKERMAAASGMTRAQVGNWFINARVR 147 69*****************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.9E-4	97	155	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-19	99	154	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.106	99	151	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.18E-13	101	157	IPR009057	Homeodomain-like
Pfam	PF05920	4.5E-16	108	147	IPR008422	Homeobox KN domain
CDD	cd00086	1.32E-6	114	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MERPSAPLPP RYWPGVVRKP RPRADGKPLR GRRPSPATIK KRAADAKPRA VARVKAAATT 60 TAVSRDASDD ASDDDDDDDD DAVDDDASIK GGFKFNSQSK RTQSLRDWLV AHFDSPYPEE 120 RDKERMAAAS GMTRAQVGNW FINARVRIWR PLVMQLGEEV RLLPIRPRSR GERRSLRTFP 180 VVTLHPRFLF NA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FN257202	4e-47	FN257202.1 Micromonas pusilla Introner-3 repeat sequence IE3.3, strain CCMP1545.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003056686.1	1e-134	predicted protein
TrEMBL	C1MNQ3	1e-133	C1MNQ3_MICPC; Predicted protein
STRING	XP_003056686.1	1e-134	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3210	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27220.1	9e-17	BEL1-like homeodomain 5

Link Out ? help Back to Top
Phytozome	14788
Entrez Gene	9682589

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]