PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

150835

Common Name

MICPUCDRAFT_55652

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 134aa MW: 14044.1 Da PI: 7.7961

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
150835	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	26.7	9.6e-09	34	58	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C++ L+Y GA sV C++C+ + 150835 34 CGSCHIQLMYRSGAASVSCTVCNSI 58 **********************975 PP
2	zf-LSD1	30.9	4.6e-10	68	91	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggCr +L Y +GA sV+Ca C+ 150835 68 CGGCRMMLKYSAGALSVQCAACQY 91 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.9E-4	7	21	IPR005735	Zinc finger, LSD1-type
Gene3D	G3DSA:3.90.10.10	6.1E-4	9	89	No hit	No description
SuperFamily	SSF48695	2.84E-7	10	89	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	4.9E-7	32	59	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.9E-8	34	58	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.8E-9	67	93	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.1E-9	68	92	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034051	Biological Process	negative regulation of plant-type hypersensitive response
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:0045595	Biological Process	regulation of cell differentiation
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
CKFFTSQGAA YVQCALCHTV TPAPSSEDIA WLTCGSCHIQ LMYRSGAASV SCTVCNSITA 60 APVRYCQCGG CRMMLKYSAG ALSVQCAACQ YITVTIFTRG KRGANMVVVE NPPTLDENGH 120 VKNSTSVGLA EDS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003056530.1	1e-89	predicted protein
TrEMBL	C1MLB2	2e-88	C1MLB2_MICPC; Predicted protein
STRING	XP_003056530.1	4e-89	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4613	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	4e-20	LSD family protein

Link Out ? help Back to Top
Phytozome	150835
Entrez Gene	9681777

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]