PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

152798

Common Name

SELMODRAFT_443975

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 190aa MW: 21205.9 Da PI: 10.2106

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
152798	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.2	1.4e-11	7	57	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l +v+++G g W++I + R+ ++k++w++ 152798 7 KQKWTAEEEAALRAGVEKYGAGKWRAIQKDEEfgpvlVSRSNVDLKDKWRN 57 79*************************99888*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.662	2	63	IPR017930	Myb domain
SuperFamily	SSF46689	8.61E-16	5	60	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-9	6	61	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-9	7	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-15	7	58	IPR009057	Homeodomain-like
CDD	cd11660	3.80E-19	8	58	No hit	No description
SMART	SM00526	9.4E-12	101	166	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	21.126	103	171	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.3E-13	104	171	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	8.16E-14	105	180	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	5.1E-9	106	164	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MTVGQQKQKW TAEEEAALRA GVEKYGAGKW RAIQKDEEFG PVLVSRSNVD LKDKWRNISA 60 TNNGNRNRGK GAGQKTGGRR AKSQDGSDKE ELSPVPDSEK KMLGTKYDNL ILGALSALKE 120 PNGSSITDIA EYIEERQSVP PSFKKLVVSK LKSMVLEGKL IKVHQNYKIN DEFPSDGRAK 180 FQRLRNNQDD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002978810.1	1e-139	single myb histone 1
TrEMBL	D8S5Z0	1e-137	D8S5Z0_SELML; Uncharacterized protein
STRING	EFJ20257	1e-138	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP855	16	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-30	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	152798
Entrez Gene	9658969

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]