PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 15490
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family YABBY
Protein Properties Length: 157aa    MW: 17671.3 Da    PI: 10.7817
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
15490genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY34.37.9e-1153111102160
  YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
             +  d e +r  ++ +   k  r+P+a+n f+k+e+qr++ +  d+s +e f+  a+ W
  15490  53 GRGMDSEGKRLTKAQKRELKPPRAPTAFNMFMKDEVQRVRVERGDLSPKEVFTECARRW 111
            3444555556666666666777************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.3E-949112IPR006780YABBY protein
SuperFamilySSF470957.59E-961114IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-768113IPR009071High mobility group box domain
CDDcd000848.45E-573113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSDDERDEEM TAMELAKRLA PAFAKMAEAA HEASGMLSKF AKIPNESTLV KRGRGMDSEG  60
KRLTKAQKRE LKPPRAPTAF NMFMKDEVQR VRVERGDLSP KEVFTECARR WREKKSRTQG  120
SLQGGGSLNP VSTPPAMKDK HKKDKSHKKD KKNKDK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005850.0CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001418036.11e-110predicted protein
TrEMBLA4RXQ91e-109A4RXQ9_OSTLU; Uncharacterized protein
STRINGABO963291e-110(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP925545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.16e-08YABBY family protein