PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 15538
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family HB-other
Protein Properties Length: 128aa    MW: 14449.9 Da    PI: 10.47
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
15538genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.34e-11857352
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52
              k+t++ ++ + +Le+++++++yp+ + +e   + ++L+ +++ +WFq rR
     15538  8 KKTRLGSSNVATLEKVYAMTQYPDDALIESVRQATKLPASKIINWFQERR 57
              678889999****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.09363IPR001356Homeobox domain
SMARTSM003894.2E-7567IPR001356Homeobox domain
SuperFamilySSF466894.19E-11758IPR009057Homeodomain-like
PfamPF000468.2E-9857IPR001356Homeobox domain
CDDcd000861.31E-8858No hitNo description
Gene3DG3DSA:1.10.10.607.5E-11958IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MPAYKSYKKT RLGSSNVATL EKVYAMTQYP DDALIESVRQ ATKLPASKII NWFQERRRGA  60
SPSAMRRDRD VVNRQVDRRG TTGGYSYTRR DERDEGRGLR RGDARDEYGG GGGERRGRDD  120
ASDWSPN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005850.0CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417834.11e-86predicted protein
TrEMBLA4RXY32e-85A4RXY3_OSTLU; Uncharacterized protein
STRINGABO961274e-86(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP710966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.12e-08overexpressor of cationic peroxidase 3