PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 155821
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 173aa    MW: 18878.4 Da    PI: 10.1033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
155821genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-051035123
             EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
             y Cp   Cg++F+++  L  H ++ H
   155821 10 YACPheSCGMTFTNRQALAMHKKSiH 35
             89*********************988 PP
2zf-C2H223.11.9e-074064123
             EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
             ++Cp   Cgk+Fs++s+L++H   H
   155821 40 HVCPvpGCGKRFSNSSTLNQHRLAH 64
             79*******************9877 PP
3zf-C2H221.18.1e-077094123
             EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
             +kC+   Cgk+F++ s L +H r+H
   155821 70 HKCEvaGCGKTFKTESALATHGRVH 94
             79*******************9998 PP
4zf-C2H220.99.6e-07100124123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              +kC+   CgksF  k +L+rH rtH
   155821 100 FKCEveGCGKSFGYKLDLQRHTRTH 124
              89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.8E-9233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.2E-7242No hitNo description
PROSITE profilePS5015711.4681040IPR007087Zinc finger, C2H2
SMARTSM003556.2E-41035IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801235IPR007087Zinc finger, C2H2
SuperFamilySSF576676.59E-113681No hitNo description
SMARTSM003554.8E-44064IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.0044069IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-104060IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804264IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-166191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-1568124No hitNo description
SMARTSM003550.00597094IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.9997099IPR007087Zinc finger, C2H2
PROSITE patternPS0002807294IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-1792126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.3E-5100124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.256100129IPR007087Zinc finger, C2H2
PROSITE patternPS000280102124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MNEHTGARPY ACPHESCGMT FTNRQALAMH KKSIHDPKEH VCPVPGCGKR FSNSSTLNQH  60
RLAHSDERPH KCEVAGCGKT FKTESALATH GRVHTGEKPF KCEVEGCGKS FGYKLDLQRH  120
TRTHFGQPAK PGASRKRPRG VGGAAQLPPP GHTAAQPGFW NMNSMTWLTG ER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-2681272117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003058678.12e-82predicted protein, partial
TrEMBLC1MSH04e-81C1MSH0_MICPC; Predicted protein (Fragment)
STRINGXP_003058678.17e-82(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-25relative of early flowering 6