PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 16521
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 247aa    MW: 28152.1 Da    PI: 8.9058
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
16521genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00146788223
             EETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
             +Cp C+k F   ++L  Hi t H
    16521 67 ECPFCKKAF-VAHYLAAHIATkH 88
             5********.*********9988 PP
2zf-C2H211.60.0008795119223
              EET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
              +C+   C+++F +  +L rH  + H
    16521  95 ECHfkGCSECFVTTKDLDRHVALvH 119
              69999***************98877 PP
3zf-C2H212.40.00048123146123
              EEETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
              ++C+ Cg +Fs+k   ++H    H
    16521 123 HTCKLCGLPFSTKQAKEKHEAFgH 146
              79*****************87666 PP
4zf-C2H215.64.7e-05154177323
              ET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
              Cp   Cgk+F++ ++++ H +  H
    16521 154 CPvaGCGKMFKHADSMRAHVMQfH 177
              9999***************98766 PP
5zf-C2H213.40.00023186211123
              EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
              y+C+  dC+++F++k + ++H +  H
    16521 186 YQCEhpDCDETFRTKRERTKHSKEvH 211
              99*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355156688IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.08E-580132No hitNo description
Gene3DG3DSA:3.30.160.601.1E-582116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2194119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096119IPR007087Zinc finger, C2H2
SuperFamilySSF576676.19E-6123174No hitNo description
SMARTSM003551.4123146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-7150173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.245152182IPR007087Zinc finger, C2H2
SMARTSM003550.015152177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154177IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.365186216IPR007087Zinc finger, C2H2
SMARTSM003550.0031186211IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280188211IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGDGERDWRE RFLELTPSAV VEAATEMRRL LTVVELTRYI SAHGGGEVPS NVSTSKWFAK  60
TKVRREECPF CKKAFVAHYL AAHIATKHTG IKPVECHFKG CSECFVTTKD LDRHVALVHE  120
HKHTCKLCGL PFSTKQAKEK HEAFGHAEGK SVACPVAGCG KMFKHADSMR AHVMQFHGDD  180
SERRMYQCEH PDCDETFRTK RERTKHSKEV HSSTFPKKRR KPSTQTRLKS PTKMSRWLLD  240
EDDDEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215221PKKRRKP
2216220KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005880.0CP000588.1 Ostreococcus lucimarinus CCE9901 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419179.10.0predicted protein
TrEMBLA4S1N30.0A4S1N3_OSTLU; Uncharacterized protein
STRINGABO974720.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.16e-08relative of early flowering 6