PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 16791
Common NameSELMODRAFT_16791
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 136aa    MW: 14868.1 Da    PI: 9.0246
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
16791genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.2e-10631127
             --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
             +kt+lC++f++ GtC+y  +C+FaHg+
    16791  6 FKTKLCSRFRA-GTCPYITNCNFAHGM 31
             69*********.*************95 PP
2zf-CCCH30.27.5e-105982225
             -S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
             k ++C++f++ G C+yG+rC F+H
    16791 59 KLRPCKRFFAEGVCPYGERCIFSH 82
             5689******************** PP
3zf-CCCH46.84.7e-15106131126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              +kt+lC+ +  tG C++Gd+C+FaHg
    16791 106 WKTRLCNKWETTGSCPFGDKCHFAHG 131
              8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.46E-8336IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4531IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.422532IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-15538IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0655785IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-75886IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-85883IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-45984IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-75982IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-16102132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-10102132IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-8105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892105133IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-12106131IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
TGTIFFKTKL CSRFRAGTCP YITNCNFAHG MEELRKPPPG WEEFVNPPVV ADGGGNAAKL  60
RPCKRFFAEG VCPYGERCIF SHEDPAVKPA ATTAISNAST AKPLNWKTRL CNKWETTGSC  120
PFGDKCHFAH GIAGKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002969090.29e-98zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-42C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLD8RCV81e-95D8RCV8_SELML; Uncharacterized protein (Fragment)
STRINGEFJ302062e-96(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-30C3H family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]