PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1700010040
Common NameOt17g00400, OT_ostta17g00350
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Whirly
Protein Properties Length: 241aa    MW: 25920.2 Da    PI: 10.9701
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1700010040genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly215.16.6e-67862261139
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvd.laskesceffhdpa.akgsneGkvrkalkve 97 
                 +vykt++a+k+kavrpt++al ++n++++r+Gg+llelanata+r+ydW++k+sf+ls+te+ael+d +a+++sc+ffhd+a a+g++ G+++ka+kve
  1700010040  86 GVYKTRGAMKMKAVRPTLGAL-GENAVVRRPGGVLLELANATAPRTYDWQNKGSFMLSGTEAAELADrMAANGSCSFFHDSAkANGGGGGTLGKAFKVE 183
                 79*******************.***********************************************************9889999*********** PP

      Whirly  98 PlpdGs.GlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                 P+pdGs G+fvnl+vt s+++g+++fsvPvs++e+a++r+llv
  1700010040 184 PMPDGSgGMFVNLTVTLSENRGQQRFSVPVSYGESAAIRQLLV 226
                 ****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.2E-4874239IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544475.96E-1779238IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.4E-4587223IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MRAIGTTCAA TARALRRAST SADVARADRA RDRRPRPRDG DRRERHHRWT SSTAYGASTP  60
PPRSWDDGAR RDDGRAPPPT TFVDFGVYKT RGAMKMKAVR PTLGALGENA VVRRPGGVLL  120
ELANATAPRT YDWQNKGSFM LSGTEAAELA DRMAANGSCS FFHDSAKANG GGGGTLGKAF  180
KVEPMPDGSG GMFVNLTVTL SENRGQQRFS VPVSYGESAA IRQLLVYLVP RVLGFDEVFK  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A2e-207623533190p24: plant transcriptional regulator PBF-2
1l3a_B2e-207623533190p24: plant transcriptional regulator PBF-2
1l3a_C2e-207623533190p24: plant transcriptional regulator PBF-2
1l3a_D2e-207623533190p24: plant transcriptional regulator PBF-2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003083800.11e-175Plant transcription factor
TrEMBLQ00TP91e-173Q00TP9_OSTTA; Plant transcription factor
STRINGQ00TP91e-174(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.18e-20ssDNA-binding transcriptional regulator
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]