PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

17503

Common Name

SELMODRAFT_17503

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ZF-HD

Protein Properties

Length: 143aa MW: 15764.6 Da PI: 6.0061

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
17503	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	69.9	4.1e-22	2	55	6	59
ZF-HD_dimer 6 YkeClkNhAaslGgh.avDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 YkeC +N a+ Gg+ + DGC+ f+++ g++g+++alkCaACgCHRnFH +e+e+ 17503 2 YKECVRNINAENGGEeVHDGCQKFTAA-GKDGSPEALKCAACGCHRNFHQQESET 55 *****99999986378****9.999*****************99875 PP
2	Homeobox	28.7	2.3e-09	88	143	1	52
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +rkRt f++eql+ Le+l e + ++ +++ + A+++g+t + k+WF+Nr+ 17503 88 KRKRTIFSAEQLTKLEALAEsvhwSLGNIPKDQQASAAMEIGITVESLKYWFHNRK 143 79*************99955555678999999999****************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.6E-23	2	53	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.8E-18	2	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	9.0E-12	2	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	17.595	2	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.9E-17	76	143	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-12	79	143	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.224	85	143	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-6	88	143	IPR001356	Homeobox domain
CDD	cd00086	2.52E-4	88	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
LYKECVRNIN AENGGEEVHD GCQKFTAAGK DGSPEALKCA ACGCHRNFHQ QESETPTAIK 60 GSDLTQFADD ILGVDKAQSP DDSTPKEKRK RTIFSAEQLT KLEALAESVH WSLGNIPKDQ 120 QASAAMEIGI TVESLKYWFH NRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024542672.1	2e-49	zinc-finger homeodomain protein 2
Refseq	XP_024543727.1	2e-49	zinc-finger homeodomain protein 2
TrEMBL	D8SEU6	1e-103	D8SEU6_SELML; Uncharacterized protein (Fragment)
STRING	EFJ16933	1e-104	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-23	homeobox protein 22

Link Out ? help Back to Top
Phytozome	17503
Entrez Gene	9634565

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]