PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1800010021
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 249aa    MW: 27532.9 Da    PI: 9.2044
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1800010021genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.3e-075984227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt+lCr+f+    C+yG+rC FaHg+
  1800010021 59 KTRLCRHFQSPEGCRYGERCFFAHGE 84
                8***********************96 PP
2zf-CCCH33.66.4e-11204230127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ykt++C  +  +G C +Gd+C+FaHg+
  1800010021 204 YKTKICVSWINNGSCTFGDNCHFAHGE 230
                 9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.7E-155288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-95788IPR000571Zinc finger, CCCH-type
SMARTSM003560.0055784IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3285785IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-55984IPR000571Zinc finger, CCCH-type
SMARTSM003229.0E-9109181IPR004087K Homology domain
PROSITE profilePS5008414.76110176IPR004088K Homology domain, type 1
SuperFamilySSF547912.05E-13112180IPR004088K Homology domain, type 1
PfamPF000134.6E-11115177IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.5E-13115180IPR004088K Homology domain, type 1
CDDcd001052.82E-11115177No hitNo description
SMARTSM003563.0E-6203230IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211203231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-9203234IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-7204230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-13204234IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
XXRRTGCARI LQHSRVRVRD DCHFLHTYRA GLTLPSRPAP LPYVYAVNAH GMHMNEKVKT  60
RLCRHFQSPE GCRYGERCFF AHGEAELRTE EFNIATGIGM PGCGTGSAFE QCVLVPVPQA  120
HVGTVVGKAG SNIARTSSES GAKVSMLSAE YTNSDGSRLC RVVGTPLDVQ KAKDMIEHRL  180
VIARRKKRDD GKSLRDDKSS MKPYKTKICV SWINNGSCTF GDNCHFAHGE VQLQKRFGND  240
ENVESIVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003084052.21e-173Zinc finger, CCCH-type
TrEMBLA0A096P9K71e-171A0A096P9K7_OSTTA; Zinc finger, CCCH-type
TrEMBLA0A454XTM71e-171A0A454XTM7_OSTTA; Uncharacterized protein
STRINGA0A096P9K71e-172(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1347533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-14C3H family protein