PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1800010213
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 387aa    MW: 41508 Da    PI: 9.2472
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1800010213genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-13250345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwq 45
                     +WTt E+e+l d ++++G ++W++Ia +m+      + +t+kqc+ r+ 
       1800010213  2 PWTTREEEKLRDIIARHGAKRWNAIATMMNesgacdEPKTAKQCRRRYT 50
                     8***********************************889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.713157IPR017930Myb domain
PfamPF002495.7E-12150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-12259IPR009057Homeodomain-like
SMARTSM007173.7E-8255IPR001005SANT/Myb domain
CDDcd001673.48E-11253No hitNo description
SuperFamilySSF466893.09E-10259IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MPWTTREEEK LRDIIARHGA KRWNAIATMM NESGACDEPK TAKQCRRRYT GHLTNEIKXX  60
XXXXXXRRDQ RQGDQWAQGD DDGDEGDESR ARGRDRACEG GDGREAEGDP ESGGKNAARS  120
RGEERISPTL FMRSPTSSPG ASERLTAWRP TLSINIPSRD VGRGGKSALQ PSTSLKPAAS  180
LSGIFPAGYS VGKTLSLSCA ELDLLKEVQE MISPRVMAAN SPGGSNGSAF VRYADGASRD  240
SEEKSTNGLK HVMSWLLSAT PATTVREENM GDDRSAVPTS SRRSADNVSV SLAPNEDGSD  300
ALERGATLKH FLSLKTEGTT PRSASARPGS DPLARPVSIP SFTQSELNLL LNALGGSTQA  360
SPRAGATASK VEVEPIRATR HRRTRA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840593.11e-173SLC41 divalent cation transporters, integral membrane domain
TrEMBLA0A096P9U61e-171A0A096P9U6_OSTTA; SLC41 divalent cation transporters, integral membrane domain
STRINGA0A096P9U61e-172(Ostreococcus tauri)