PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 181406
Common NameNPH4C-1, SELMODRAFT_181404
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ARF
Protein Properties Length: 908aa    MW: 102685 Da    PI: 7.1162
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
181406genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.92.5e-25119220199
             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d+++++W++++iyr++++r++lt+GW+ Fv+a++L++gD+v+F   ++++ +l++++
  181406 119 FCKTLTASDTSTHGGFSIPRRAAEKVfppldftKQPPA--QELVAKDLHNQQWTFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDTVLFI--RDENNHLLLGI 217
             99*****************************8554444..48************************************************..55788889999 PP

             E-S CS
      B3  97 frk 99 
             +r+
  181406 218 RRA 220
             997 PP
2Auxin_resp1102.5e-36245328183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras seFvv++ +++ka++  +v+vGmRf+m++etedss+rr++Gt++g+ dld+vrWpnS Wr Lk
      181406 245 AAHAATTNSRFTIFYNPRASFSEFVVPFCRFSKATYhPRVTVGMRFRMELETEDSSTRRYMGTITGIGDLDSVRWPNSLWRTLK 328
                 79*********************************94579*****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.29E-45104248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-43111234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-23118219No hitNo description
PROSITE profilePS5086313.267119221IPR003340B3 DNA binding domain
PfamPF023621.7E-23119220IPR003340B3 DNA binding domain
SMARTSM010192.4E-25119221IPR003340B3 DNA binding domain
PfamPF065071.1E-32245328IPR010525Auxin response factor
PfamPF023092.4E-11750861IPR033389AUX/IAA domain
PROSITE profilePS5174522.181771858IPR000270PB1 domain
SuperFamilySSF542779.81E-8771850No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MNCLLAGEKK AMNTALWLEC AGPLVTLPTV GSHVVYFPQG HSEQVVASTT QKDGVEAEIP  60
NYPSLPAHLI CHLHNITLHA DPDTDEVYAQ MTLQPVQNDK EPFLTPDLGI QPKQQTLSFC  120
KTLTASDTST HGGFSIPRRA AEKVFPPLDF TKQPPAQELV AKDLHNQQWT FRHIYRGQPR  180
RHLLTTGWSV FVSAKRLQAG DTVLFIRDEN NHLLLGIRRA NRQQANVPSS LLSSDSMLIG  240
VLAAAAHAAT TNSRFTIFYN PRASFSEFVV PFCRFSKATY HPRVTVGMRF RMELETEDSS  300
TRRYMGTITG IGDLDSVRWP NSLWRTLKVG WDESTAGQRQ RRVSLWEIEP LTAPYFPCTS  360
SLFLRKRTRL DGMLSFCAGE LDELDAIRSQ VWARAEDGKM DIRALNAAGL SLEHWLRFQH  420
KPEAAIATAS QPDYYRAMAA QALQEFRSVD SAKQQHQQQQ QQQQQQQFVT PVIHMPPQQQ  480
PQQQQIQYRS QLPQQQVLQS HPPQQPIFQP QQLQQQQQQL HHQQQQQQSS HHQQQQQHHH  540
HHQQHRQQQQ QQQQQQQQQQ QQQLQLQQQQ QQQQQQQSYQ LQVPASLQQT VPLASRLTPG  600
FSEDSGASFG SMPANNMSLQ SLLNRSNPDA LLQESQYSSQ PVAAALKQNQ LPLQQQQQQQ  660
IPAPGLLSQE PQLSDVQSDL RSNSHLLFGV NIDSPLMLSS AAAAVAQGFA PADKAKDVSF  720
SMIGSPSGSD MHMSGGTAVA LDDSPTSWQQ QQHQQQQQQQ QQQQVQPSPM RTFTKVVYKT  780
GSVGRSIDVT RLKNYEELRR DIARMFNLEG QLLMDSCRSS WQLVFVDYEG DVLLVGDDPW  840
EEFVGCVRFI KILSPSEVQQ LNRENLESIA AVPNQRQTSS SSDDCANPTN NFAQDPRLSY  900
HHRPDFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-150934948388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024514787.10.0auxin response factor 17
TrEMBLD8SNW50.0D8SNW5_SELML; Auxin response factor
STRINGEFJ138650.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]