PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

18758

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 209aa MW: 23832.7 Da PI: 11.5962

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
18758	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.5	4.7e-13	13	65	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t ++ e+L +Fe +r p+a++r++LAk++g te+ V WF rRak+k+ 18758 13 TGVSDAGAEILRGVFELERRPDAATRRRLAKQIGTTEQAVNAWFRSRRAKMKR 65 556677789*******************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.912	6	66	IPR001356	Homeobox domain
SMART	SM00389	2.3E-6	7	70	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-12	11	72	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-10	15	65	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-12	20	66	IPR009057	Homeodomain-like
CDD	cd00086	2.01E-6	21	65	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MARALDEAKA RQTGVSDAGA EILRGVFELE RRPDAATRRR LAKQIGTTEQ AVNAWFRSRR 60 AKMKRDRLRR VLLVVLLLVG AAGLAFYAWN TFHQTAAAKR RMEALGKNYK WMTRSGLPRP 120 YADKMQRERY GKKKLTYEKE KIITLGGKED ERVVRYTKEN PKSSPLTKAP ETPRQKLERI 180 RAEASKKASK GRIAPRAQPN TLREPQKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	65	RRAKMKRD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000597	0.0	CP000597.1 Ostreococcus lucimarinus CCE9901 chromosome 17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001422266.1	1e-148	predicted protein
TrEMBL	A4SA11	1e-147	A4SA11_OSTLU; Uncharacterized protein
STRING	ABP00583	1e-148	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9294	5	5

Link Out ? help Back to Top
Phytozome	18758