PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

189333

Common Name

MICPUCDRAFT_51388

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 192aa MW: 20897.1 Da PI: 7.8474

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
189333	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.3	1.6e-08	34	71	3	40
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 e +r rr +NRe+ArrsR+RK++++ eLe+ +L+ 189333 34 EARRLRRVKSNRESARRSRARKQQRLVELERSTRVLDD 71 57899**************************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-6	29	84	No hit	No description
SMART	SM00338	1.3E-8	32	96	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.358	34	97	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-6	34	71	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.16E-7	36	89	No hit	No description
PROSITE pattern	PS00036	0	39	54	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MIDHLDPPVN VSPDATSDEH ENHENHHGED DPDEARRLRR VKSNRESARR SRARKQQRLV 60 ELERSTRVLD DDVRRTRQNV ALMSSVMYHV VEENRQLESE CAAIGRQILA MNEQAVAKAR 120 ADAIAQGAMA RRGGGTTTTG TGASGGAGAG MIGRVDSPKS PHRIRRAPSL TVVREEEAEY 180 AFHAGGTTSA A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	55	RRSRARKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003061557.1	1e-136	predicted protein
TrEMBL	C1N1F9	1e-135	C1N1F9_MICPC; Predicted protein
STRING	XP_003061557.1	1e-136	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15251	2	2

Link Out ? help Back to Top
Phytozome	189333
Entrez Gene	9687248

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]