PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 190893
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family AP2
Protein Properties Length: 202aa    MW: 21332.3 Da    PI: 11.3514
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
190893genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-162473155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            ++y+GV+ +k++grW+A++++      +++++lg+f  +e Aa+a+++a+++++g
  190893 24 TRYRGVSCYKRTGRWEAHVWHG-----KRQIHLGSFKDPESAARAYDKAALRFRG 73
            68****************9994.....6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-92473IPR001471AP2/ERF domain
CDDcd000184.59E-132485No hitNo description
PROSITE profilePS5103216.4632585IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-142586IPR001471AP2/ERF domain
SMARTSM003801.5E-172591IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-132577IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
PTKATAAATA TAAAAAAATE KPTTRYRGVS CYKRTGRWEA HVWHGKRQIH LGSFKDPESA  60
ARAYDKAALR FRGLGGCSDA DLNWPSAAYA TDAEFQKMMD RKMVSDDAFI RWTRAQGKLR  120
PGRGTPRAGA SGGGGGDDDA AAASESPSGS PVKRPAWPSP PPRAVAKPKP KPKPKPKPKP  180
KLKRSAAATT TTKKRAKKAR A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP575168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.15e-19AP2 family protein