PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 192534
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family bZIP
Protein Properties Length: 226aa    MW: 23942.7 Da    PI: 9.7224
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
192534genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.61.5e-24121184164
             XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
             e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL  +v++L++eN +L+ el++lk+ + +l+++++
  192534 121 ERELKRQRRKQSNRESARRSRLRKQAECEELGGRVDALSTENITLRAELKRLKDACGSLETDNK 184
             89*********************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-19116180No hitNo description
PfamPF001705.1E-22121183IPR004827Basic-leucine zipper domain
SMARTSM003381.4E-20121185IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.082123186IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-12124179No hitNo description
CDDcd147021.49E-18126176No hitNo description
PROSITE patternPS000360128143IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090342Biological Processregulation of cell aging
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MQPQAQFYAQ QQQQQQQMNP YAMWPQQAMM NPYNGMYPGY MGAGYGAANA GADASAAVKA  60
EAGKTGFDPA QLAQWQQTVA AQQRAQSGAA AAQTAAVASK AGGVGGVTNG TNGAPEMWMD  120
ERELKRQRRK QSNRESARRS RLRKQAECEE LGGRVDALST ENITLRAELK RLKDACGSLE  180
TDNKTLADKL KVIKGDDVEA AAEGGKKTSP TKKGGKAADA DGGKD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143RRSRLRK
2137144RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003055732.11e-107predicted protein
TrEMBLC1MIW11e-105C1MIW1_MICPC; Predicted protein
STRINGXP_003055732.11e-106(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4426911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.22e-25G-box binding factor 1