PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 192902
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB
Protein Properties Length: 655aa    MW: 67391.4 Da    PI: 10.3674
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
192902genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-172571148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT++Ed++l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
           192902 25 KGGWTPDEDDILRRAVAHYKGKNWKKIAEYFE-ERTDVQCLHRWQKVL 71
                     688*****************************.************986 PP
2Myb_DNA-binding62.68e-2077123148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++++vk lG ++W++Ia+ ++ gR +kqc++rw+++l
           192902  77 KGPWTKEEDDKIIELVKALGAKQWSKIAQQLP-GRIGKQCRERWYNHL 123
                      79******************************.*************97 PP
3Myb_DNA-binding55.11.8e-17129173147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  W+ eEd++l+ a++++G++ W+ Ia+t+  gRt++ +k++w++ 
           192902 129 REEWSREEDQKLIVAHAEYGNR-WAEIAKTFV-GRTDNAIKNHWNST 173
                      679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1612071IPR017930Myb domain
SMARTSM007172.8E-152473IPR001005SANT/Myb domain
PfamPF002491.4E-152571IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-152681IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-232782IPR009057Homeodomain-like
CDDcd001679.54E-142871No hitNo description
PROSITE profilePS5129431.91372127IPR017930Myb domain
SuperFamilySSF466893.59E-3074170IPR009057Homeodomain-like
SMARTSM007171.2E-1876125IPR001005SANT/Myb domain
PfamPF002491.1E-1877123IPR001005SANT/Myb domain
CDDcd001671.46E-1679123No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2783126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-23127178IPR009057Homeodomain-like
SMARTSM007172.2E-16128176IPR001005SANT/Myb domain
PROSITE profilePS5129423.166128178IPR017930Myb domain
PfamPF002499.8E-15129173IPR001005SANT/Myb domain
CDDcd001671.00E-12131174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MLADKVTSLP PVVGRTGGPT RRSAKGGWTP DEDDILRRAV AHYKGKNWKK IAEYFEERTD  60
VQCLHRWQKV LNPELVKGPW TKEEDDKIIE LVKALGAKQW SKIAQQLPGR IGKQCRERWY  120
NHLNPEIKRE EWSREEDQKL IVAHAEYGNR WAEIAKTFVG RTDNAIKNHW NSTLKRKVDE  180
AVARGLPPLA AADAAADAEG KKAKNADKNG AKKQKAIAGA KASGAKASDV GGAAKTSKGK  240
KRKASDELAF GGPGANKRAN DPDIAHAAAQ MMGQYNLHAN GQGGNHAAAA AAAAAAAAAV  300
FDATLHNMLM SPTNGNSNGA AGAGAAPSPF GTGTTAAVQQ LFAASPSLYN NANSNGAPSP  360
DGKSGRPSPF PMTELFESMH DGSPTGKSNG AASPLGALST MMATGASPLL GNFAGGSPMN  420
LYNALLSSPG GSILRKNTVM RSGATPASNG ANANSMAPPR TQGGGEKTAG GNPEDASPSI  480
SGFGWFDTPG RGGAAAAKAG RTPAAKEPTP GRTTRASAAT NAAAAGPPRM ANAELAGLAS  540
PPHVKGGGAG IPGRLSSIFR RAPSGNDLKT ANAMKGGKEP AASDDVLEVM RQLEESNAGL  600
YMQAEAVMAR EAAEEEKRGG RATRAHGGVG GEDKGSPGAG GGNKFSPSQY LTAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-67241785159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-67241785159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003057209.10.0predicted protein
TrEMBLC1MP220.0C1MP22_MICPC; Predicted protein
STRINGXP_003057209.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-84myb domain protein 3r-5