PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 193230
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB
Protein Properties Length: 340aa    MW: 35848.7 Da    PI: 9.9481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
193230genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-13949345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      WT+ Ed  l+++ + +G++ W+++a++++ g+t+ qc  rw+
           193230  9 VWTAKEDAELARLQEIHGNR-WALVAAELP-GKTGQQCAQRWR 49
                     7*******************.*********.***********8 PP
2Myb_DNA-binding48.81.6e-1558103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + +WT++Edell ++ +++G + W+ Iar++  gRt+ qc  rw+ +l
           193230  58 KEKWTAQEDELLSRLYEEHGQR-WAEIARHLE-GRTDQQCMGRWRRHL 103
                      679******************9.*********.************986 PP
3Myb_DNA-binding40.18.2e-13109152146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++W   Ed  l +++ +lG++ W+ I++++  gRt+ qc+ rw++
           193230 109 KDAWNDTEDHELMRLHDKLGPR-WSNISKMLT-GRTAQQCRARWFQ 152
                      679*****************99.********9.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.336152IPR017930Myb domain
SMARTSM007172.4E-13654IPR001005SANT/Myb domain
PfamPF002491.1E-12949IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-201063IPR009057Homeodomain-like
CDDcd001671.56E-101049No hitNo description
SuperFamilySSF466893.12E-2532104IPR009057Homeodomain-like
PROSITE profilePS5129426.86253107IPR017930Myb domain
SMARTSM007171.6E-1657105IPR001005SANT/Myb domain
CDDcd001675.31E-1360103No hitNo description
PfamPF139217.8E-1961120No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2264110IPR009057Homeodomain-like
SuperFamilySSF466892.37E-2089154IPR009057Homeodomain-like
SMARTSM007173.2E-10108156IPR001005SANT/Myb domain
PROSITE profilePS5129416.437108158IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-16111153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVEGKNSSVW TAKEDAELAR LQEIHGNRWA LVAAELPGKT GQQCAQRWRH KVNPNIKKEK  60
WTAQEDELLS RLYEEHGQRW AEIARHLEGR TDQQCMGRWR RHLDPTVKKD AWNDTEDHEL  120
MRLHDKLGPR WSNISKMLTG RTAQQCRARW FQLSAAEASA GDDDRSVASA PDSPKKGAKG  180
VGGAGAKRGA RGSTPPISPS TPANTDEFDN GGTVSSKRGH GESAKSAKGA AKGGGGIGVS  240
PGGSPNKKQK TLKDAIAQRR ADREGSDGGG GSSRSSGTLA DGLGGARPLT HPEGFGNGGG  300
LDMLAMLYAA AVTYERGFGG GEGQGAQGGA VAVPSEVNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-32101706151MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-32101706151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013254e-33CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002501547.11e-100predicted protein
TrEMBLC1E5042e-99C1E504_MICCC; Uncharacterized protein
STRINGXP_002501547.11e-100(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.17e-30myb domain protein 3r-4