PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 19476
Common NameSELMODRAFT_97273
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HD-ZIP
Protein Properties Length: 87aa    MW: 10510.1 Da    PI: 10.4734
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
19476genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.1e-20255356
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              k+++++ +q++ Le  Fe+++++  e++++LA++lgL+ rqV vWFqNrRa++k
     19476  2 KKRRLSVDQVRSLELNFEMENKLEPERKKQLAHELGLQPRQVAVWFQNRRARWK 55
              456899***********************************************9 PP
2HD-ZIP_I/II129.51.3e-41185185
  HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85
                 ekkrrls +qv++LE +Fe+e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye+Lk++yd+l  en++L++ev+
        19476  1 EKKRRLSVDQVRSLELNFEMENKLEPERKKQLAHELGLQPRQVAVWFQNRRARWKTKQLERDYESLKASYDKLLLENKKLQAEVS 85
                 69*******************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.54157IPR001356Homeobox domain
SMARTSM003898.7E-14161IPR001356Homeobox domain
PfamPF000464.9E-17255IPR001356Homeobox domain
SuperFamilySSF466891.54E-18267IPR009057Homeodomain-like
CDDcd000868.27E-12258No hitNo description
Gene3DG3DSA:1.10.10.602.8E-20465IPR009057Homeodomain-like
PRINTSPR000311.7E-62837IPR000047Helix-turn-helix motif
PROSITE patternPS0002703255IPR017970Homeobox, conserved site
PRINTSPR000311.7E-63753IPR000047Helix-turn-helix motif
PfamPF021831.3E-105786IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
EKKRRLSVDQ VRSLELNFEM ENKLEPERKK QLAHELGLQP RQVAVWFQNR RARWKTKQLE  60
RDYESLKASY DKLLLENKKL QAEVSSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14957RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002971993.23e-52homeobox-leucine zipper protein HDG1
RefseqXP_002972528.23e-52homeobox-leucine zipper protein HOX1
SwissprotQ022832e-36HAT5_ARATH; Homeobox-leucine zipper protein HAT5
SwissprotQ8S7W94e-36HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLD8RMX93e-54D8RMX9_SELML; Uncharacterized protein (Fragment)
STRINGEFJ266144e-55(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-39homeobox 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]