PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 195159
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 571aa    MW: 62602.5 Da    PI: 8.9487
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
195159genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.2e-09501521525
              --SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
               C+ f++tG C++GdrCkF+H
   195159 501 VCHGFQKTGKCRFGDRCKFSH 521
              6999***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003220.011120209IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.109.9E-4121159IPR004088K Homology domain, type 1
SMARTSM0032221226300IPR004087K Homology domain
SuperFamilySSF547913.51E-5240303IPR004088K Homology domain, type 1
SuperFamilySSF547913.51E-8404475IPR004088K Homology domain, type 1
SMARTSM003222.3E-6406478IPR004087K Homology domain
PROSITE profilePS500849.708407473IPR004088K Homology domain, type 1
CDDcd001054.06E-6412474No hitNo description
PfamPF000139.9E-7412472IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.5E-7412474IPR004088K Homology domain, type 1
SMARTSM003568.2E-5496523IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089496524IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5499523IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-6500522IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6501521IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MPHYCTPRRR RARTTAVMSD DEMIDLNEQV DDAGMEEDAL DEHEKVATIA AATERAARSP  60
SRDSDDRRPA SPSPPRRRSP ARERSPVTRE VDDNDADKRR QAPQHQRRGG AMTAEEAAAD  120
PTVEILSIDP EDAAFILGKG GNTKKKVARA AGVKLELDSS AMDAAAANNA NGGDAGANSA  180
PSPSHALYIK DKSEAKRRRA REYVGFVLQQ RRGKIEVDFP SDGKPRDDLS IVEVPDDGCK  240
AYITGKNGSV LRMMEEEWGT LMFFGRARDA KGELGEDALM VLGTRRARRG AELKVMSAVE  300
HKVPGTFVDA ATKTLREKLS QPGDDENDGF RYDVFPFERD EISYALGAQG STRKKLAAAS  360
GAMLEYIGPL AVMAGTSGER KRCWDYLNWL LKQKNDPRLQ IDPDGRDDVS IMPIPSGKAP  420
RLQGSKGENI RSIERETSTF IVVNDVPGGA RGDERLLVFG GEEKNRRRAM RLCEDAADGR  480
YSPKSLNHGG GGRGGNDRAD VCHGFQKTGK CRFGDRCKFS HASSGGGGRG RDDSRDRGRG  540
GPDRGDRGRG GPRDDRPYAR RDRDDRYDRR *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003062331.10.0predicted protein
TrEMBLC1N3730.0C1N373_MICPC; Predicted protein
STRINGXP_003062331.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP641222