PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

195409

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

C2H2

Protein Properties

Length: 605aa MW: 63309.1 Da PI: 4.6814

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
195409	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.8e-05	226	247	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C++ F + nL rH ++H 195409 226 RCDKCKRAFASTTNLARHRQSH 247 6******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.45	225	252	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	227	247	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
MKGSVTVVDA DVAGDVATTG GADGNKEDAG IVVADAYDFD ASPEAAAAAR LEKRAENRER 60 RVRAAEEEKA RATRAAEGMM REIESRAQAE AATLFSSDDD DDDDNDGNGG TNGTPYAALA 120 SSDDEEAEEA AAMNTTTTET TEIEIETEVE TKWRLEVEER EASRPVTVSQ LLERTNERRL 180 SATLSETSSG RGSGANLPET AGLSPLSSTF SSSSIPVPTH PTPTARCDKC KRAFASTTNL 240 ARHRQSHRFD GKSGRHGKPF VPPATREQLA ACWRNLCAET RREVLDLGVG GEAGVLVLTA 300 FASRGPGSFA LVSSGVNNKD LNGDVPADGG SGDVRARYAA AGDVLRTYVD GDVNVAKTVD 360 ADAFLTALHD ASEGGFLGPK CAVDLSSMVS ERNLEAALAL LLEERLMRAY VKERGAEAER 420 TQRLLMAELD EAAADKERRE AQKMKMKAKK AKQKSRKRAG AGAGAGAGAT ETGGKSTAHD 480 SDGDDDRGGD GDGGGGVDDD VDEDARREEE KRRAEAEERA AASEREHRRN EAAAAAAAAE 540 YAEREAREAV ARARRRESAA KAVEAAAETT TEAAAAFAVG GGALAASPYG KGRAKTAAAA 600 AAAAA

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

MKGSVTVVDA DVAGDVATTG GADGNKEDAG IVVADAYDFD ASPEAAAAAR LEKRAENRER  60
RVRAAEEEKA RATRAAEGMM REIESRAQAE AATLFSSDDD DDDDNDGNGG TNGTPYAALA  120
SSDDEEAEEA AAMNTTTTET TEIEIETEVE TKWRLEVEER EASRPVTVSQ LLERTNERRL  180
SATLSETSSG RGSGANLPET AGLSPLSSTF SSSSIPVPTH PTPTARCDKC KRAFASTTNL  240
ARHRQSHRFD GKSGRHGKPF VPPATREQLA ACWRNLCAET RREVLDLGVG GEAGVLVLTA  300
FASRGPGSFA LVSSGVNNKD LNGDVPADGG SGDVRARYAA AGDVLRTYVD GDVNVAKTVD  360
ADAFLTALHD ASEGGFLGPK CAVDLSSMVS ERNLEAALAL LLEERLMRAY VKERGAEAER  420
TQRLLMAELD EAAADKERRE AQKMKMKAKK AKQKSRKRAG AGAGAGAGAT ETGGKSTAHD  480
SDGDDDRGGD GDGGGGVDDD VDEDARREEE KRRAEAEERA AASEREHRRN EAAAAAAAAE  540
YAEREAREAV ARARRRESAA KAVEAAAETT TEAAAAFAVG GGALAASPYG KGRAKTAAAA  600
AAAAA

Link Out ? help Back to Top
Phytozome	195409