PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

195467

Common Name

MICPUCDRAFT_63702

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

C3H

Protein Properties

Length: 501aa MW: 53423.6 Da PI: 7.3868

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
195467	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.9	1.7e-08	206	228	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+f++ G C+ G+ Ck+aH 195467 206 RPPCKFWLNQGVCHKGAACKYAH 228 89********************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	16.07	203	231	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0016	204	230	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-6	206	228	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.6E-5	208	230	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.19E-5	208	231	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.40.50.150	8.0E-5	265	331	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	1.48E-5	269	336	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MSSPPPPPPP PPRADSLVLL GVVVGRRNRS KRLAFFDLDV AGAGRGGGAF DAAEARSRVA 60 AVVASASVDA PPPSSSASPP PPPLPSRVEI IAKTRAYNGG FEDDDALADA RSRVLKLGNV 120 VRARGRWTRR DDGEWSCACE GVELVSSWAD ANPGKHFSRA EEEGAAAAGG GGGGGGGGGA 180 ERRRDAPAAS IDRTVVDDDD ADPPPRPPCK FWLNQGVCHK GAACKYAHAD DRGGRARAWI 240 EARRARRRAL AAEAGDPHGS DAVSKGKRAE RFAEWLVRTF GVDALNAGDG VLDVAGGRGD 300 VSFELYNRRG VKCTLVEPRA RKLSKSQRKF LKNRPPSLGA ADADAPLCAQ VRAEFEPATW 360 DRYANVSVIV GMHPDQATEA IADFALRRDV PFAVVPCCVF PRLFPRRVAV AVDAEEEEED 420 GEEEDGTPTV ADEGAAHEAA GRSEEGRRRV SKQRTTEVTE RRQLVEYLVN KTRGKMAFLD 480 FEGANQVVYS TTPPSANERP *

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MSSPPPPPPP PPRADSLVLL GVVVGRRNRS KRLAFFDLDV AGAGRGGGAF DAAEARSRVA  60
AVVASASVDA PPPSSSASPP PPPLPSRVEI IAKTRAYNGG FEDDDALADA RSRVLKLGNV  120
VRARGRWTRR DDGEWSCACE GVELVSSWAD ANPGKHFSRA EEEGAAAAGG GGGGGGGGGA  180
ERRRDAPAAS IDRTVVDDDD ADPPPRPPCK FWLNQGVCHK GAACKYAHAD DRGGRARAWI  240
EARRARRRAL AAEAGDPHGS DAVSKGKRAE RFAEWLVRTF GVDALNAGDG VLDVAGGRGD  300
VSFELYNRRG VKCTLVEPRA RKLSKSQRKF LKNRPPSLGA ADADAPLCAQ VRAEFEPATW  360
DRYANVSVIV GMHPDQATEA IADFALRRDV PFAVVPCCVF PRLFPRRVAV AVDAEEEEED  420
GEEEDGTPTV ADEGAAHEAA GRSEEGRRRV SKQRTTEVTE RRQLVEYLVN KTRGKMAFLD  480
FEGANQVVYS TTPPSANERP *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	RNRSKR
2	445	452	GRRRVSKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003063181.1	0.0	predicted protein
TrEMBL	C1N5L9	0.0	C1N5L9_MICPC; Predicted protein
STRING	XP_003063181.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP348	8	11

Link Out ? help Back to Top
Phytozome	195467
Entrez Gene	9688825

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]